Education Ph.D. in Statistics and in Bioinformatics (Expected in May 2012) Advisor: Drs. Dan Nettleton, Peng Liu, Patrick Schnable Iowa State University M.S. in Computer Science and minor in Mathematics in 2007 Advisor: Dr. Desh Ranjan New Mexico State University B.S. in Statistics and Finance in 2005 University of Science and Technology of China Publications Referred Journal Articles 1. Ji, T., Liu, P., Nettleton, D., “Borrowing Information across Genes and Experiments for Improved Error Variance Estimation in Microarray Data Analysis,” Submitted. 2. Ji, T., Liu, P., Nettleton, D., "Estimation and Testing of Gene Expression Heterosis using Microarray Data", to be submitted. 3. Schnable, P., Myers, B., Wu, W., Liu, S., Ji, T., Krupkowski, J., Thompson, M., Nettleton, D., Potential of Carbon Capturing Crops to Mitigate Global Climate Change, to be submitted to Science. 4. Jovanovic, B., Ji, T., Palic, D., "Gene expression of zebrafish embryos exposed to titanium dioxide nanoparticles and hydroxylated fullerenes," Environmental Toxicology and Chemistry Journal, 2011, 74, pp 1518-1525. 6. Springer, N., Ying, K, Fu, Y., Ji, T., Yeh, C., Jia, Y., Wu, W., Richmond, T.,Kitzman, J., Rosenbaum, H., Iniguez, A., Barbazuk, W., Jeddeloh, J., Nettleton, D., Schnable, P., “Maize inbreds exhibit high levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in genome content,” PLoS Genetics, 2009, 5(11):e1000734. 7. Liu, S., Yeh, C., Ji, T., Ying, K., Wu, H., Tang, H., Fu, Y., Nettleton, D., Schnable, P., “Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome,” PLoS Genetics, 2009, 5(11):e1000733. 8. Coble,
D., etc. (2011). Impacts of Salmonella Enteritidis Infection on the
Liver Transcrip- tome in Broilers, in preparation of submission to BMC genomics.
9. Zhao, Y., etc. (2011). Inhibition of Azoxymethane-induced Preneoplastic Lesions in the Rat Colon by a Stearic Acid Complexed High-amylose Cornstarch using Different Cooking Methods and the Global Gene Expression Analysis of Water-boiled Stearic Acid Complexed High-amylose Cornstarch, in preparation of submission. Peer Reviewed National/International Conference Papers 10. Nakazono, M., Rajhi, I., Takahashi, H., Shiono, K., Ohtsu, K., Tsutsumi, N., Ji, T., Nettleton, D., Schnable, P., Nishizawa, N. (2009). Identification of genes expressed during aerenchyma formation in maize roots using laser microdissection and a microarray, Proceedings of Interational Symposium Root Research and Applications, 2009. 11. Ji, T., Vasudevan, B., Gopavarapu, K., Ranjan, D., Gopalan, D., OConnell, M., “Tools for Cis-element Recognition and Phylogenetic Tree Construction Based on Conserved Patterns,” Proceedings of ISCA CATA, 2007.
12. Ji, T., Curry, J., Ranjan, D., OConnell, M., “Computational Identification of Cis-regulatory Elements Associated with Pungency of Chili Peppers,” Proceedings of IEEE BIBE, 2007. 13. Ji, T., Vasudevan, B., Ranjan, D., Gopalan, C., “Analysis of Cis-regulatory elements on Glutamine Synthetases Sequences,” Proceedings of IAPR PRIB, 2007. Research in Progress 14. Ji, T., Liu, P., Nettleton, D., Estimation and Testing of Gene Expression Heterosis using RNA-Sequencing Data. 15. Ji, T., Hardy, J., Scanlon, M., Model Successfully Predicts Relative Degree of Transfer of Cognitive Training Under Natural Use Conditions for a Web-Based Training Program. 16. Yang, B., etc., Transcription Profiling and Functional Analyses of Bacterial Disease Suscep- tibility Pathways of Rice. 17. Tuggle, C., Huang, T., Couture, O., Ramer-Tait, A., Christian, C., Uthe, J., Demirkale, C. Y., Ji, T., Nettleton, D., Wannemuehler, M. J., and Bearson S., The porcine transcriptomic response to Salmonella Typhimurium and its endotoxin. |
Tieming Ji |
 |